Notice

Colib’read project is now officially finished, but our efforts continue. Algorithmics and tools development are still ongoing.

Software related to the project, developped within the Alcovna/Colib’read projects, or not.

• KisSplice – A local transcriptome assembler for SNPs, indels and AS events
• Mapsembler2 – targeted assembly and visualization
• discoSnp++ – discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads
• TakeABreak – inversion breakpoints detection directly from raw NGS reads
• Lordec – hybrid error correction program for long, PacBio reads
• Commet – comparing and combining multiple metagenomic datasets
• Short Read Connector – connect reads from (meta)-genomic dataset(s)
• MindTheGap – detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome
• Leon – reference-free read compression

• Minia – short-read assembler based on a de Bruijn graph

• Gk Arrays – Gk-arrays index k-mers
• Crac – integrated RNA-Seq read analysis
• Unmaintained
  • KisSnp
  • Compareads