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Information and download: DiscoSnp++ page

The discoSnp paper will soon be published in Nucleic Acid Research. PDF proofs are already available from the discoSnp home page. discoSnp

A critical bug had been fixed in Commet. This bug affected the treatment of large files composed of more than a billion of k-mers. You can update the git repository by a “git pull” command or download the last version of Commet (https://github.com/pierrepeterlongo/commet/archive/master.zip).

We’re happy to announce that commet will soon be presented at the bibm 2014 conference.

We are pleased to announce the commet release, a new tool for comparing large metagenomic read sets, for combining and visualizing results.

TakeABreak (our new tool to detect inversion and translocation breakpoints in raw NGS reads without mapping nor assembly) has been presented at AlCoB 2014. Here are the slides Lemaitre_alcob2014 !

Bonjour à toutes et à tous. Dans le cadre du projet Colib’read (http://colibread.inria.fr/), l’équipe Irisa/Inria Genscale (http://team.inria.fr/genscale) recrute un(e) ingénieur(e) de développement pour une durée de 18 mois. Poste à pourvoir dès que possible. Profil du poste – Assurer le développement d’outils issus du projet de recherche Colib’read: détection de variants, assemblage précis de données …

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Title : Algorithms for detecting complex variants in unassembled NGS data. Context In the context of the ANR Colib’read, we propose a 18 months postdoctoral position. It will be located in the Inria/Irisa genscale team, Rennes, France http://team.inria.fr/genscale. A major expertize domain of this team is the development of methdos for the extraction of relevant …

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discoSnp is presented today (4 nov 2013) at “Colloque de Génomique Environnementale“, Rennes. Here are the slides: colloque_GE_2013_discoSnp

read2SNPs name changed. The new name is now discoSnp. Its new web page is here.