The Colib’read workshop program is now online on this page http://gdr-bim.cnrs.fr/colibread/program/. We remind you that the attendance is free but ***registration is mandatory*** see website: http://gdr-bim.cnrs.fr/colibread/. Note that space is limited, and registration will be taken in the order received. — WHAT — Calling biological information from raw reads and long reads correction. All methods …
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Jun 27
New discoSnp release
Jun 16
Workshop colib’read – November 7,8 2016
The colib’read group (http://colibread.inria.fr/) organises a workshop which aim is to present tools and results obtained for “calling biological information from raw reads”. The tools developed by the group are efficient both in terms of memory and computing time. Most of these tools are reference-free and assembly-free, and thus give the possibility to analyse reads …
Mar 04
Using discoSnp for finding SNPs in pea read sets, paper published in BMC Genomics
Gilles Boutet, Susete Alves Carvalho, Matthieu Falque, Pierre Peterlongo, Emeline Lhuillier, et al.. SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population. BMC Genomics, 2016, 17 (1), pp.121. <10.1186/s12864-016-2447-2>. <hal-01275696>
Oct 05
New discoSnp++ release
Jul 20
discoSnp++2.2.0 released
A new discoSnp++ release is available. http://colibread.inria.fr/software/discosnp/ Existing features in a few words Detect SNPs and indels from raw read set(s), without the need of a reference genome. Provides genotyping and ranking Generates a fasta file of variant predictions containing a micro-assembly of the variant left and rigth neighbors Generates a VCF of predicted variants …